Jupyter Snippet PDSH 03.01-Introducing-Pandas-Objects
Jupyter Snippet PDSH 03.01-Introducing-Pandas-Objects
This notebook contains an excerpt from the Python Data Science Handbook by Jake VanderPlas; the content is available on GitHub.
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< Data Manipulation with Pandas | Contents | Data Indexing and Selection >
Introducing Pandas Objects
At the very basic level, Pandas objects can be thought of as enhanced versions of NumPy structured arrays in which the rows and columns are identified with labels rather than simple integer indices.
As we will see during the course of this chapter, Pandas provides a host of useful tools, methods, and functionality on top of the basic data structures, but nearly everything that follows will require an understanding of what these structures are.
Thus, before we go any further, let’s introduce these three fundamental Pandas data structures: the Series, DataFrame, and Index.
We will start our code sessions with the standard NumPy and Pandas imports:
import numpy as np
import pandas as pd
The Pandas Series Object
A Pandas Series is a one-dimensional array of indexed data.
It can be created from a list or array as follows:
data = pd.Series([0.25, 0.5, 0.75, 1.0])
data
0 0.25
1 0.50
2 0.75
3 1.00
dtype: float64
As we see in the output, the Series wraps both a sequence of values and a sequence of indices, which we can access with the values and index attributes.
The values are simply a familiar NumPy array:
data.values
array([ 0.25, 0.5 , 0.75, 1. ])
The index is an array-like object of type pd.Index, which we’ll discuss in more detail momentarily.
data.index
RangeIndex(start=0, stop=4, step=1)
Like with a NumPy array, data can be accessed by the associated index via the familiar Python square-bracket notation:
data[1]
0.5
data[1:3]
1 0.50
2 0.75
dtype: float64
As we will see, though, the Pandas Series is much more general and flexible than the one-dimensional NumPy array that it emulates.
Series as generalized NumPy array
From what we’ve seen so far, it may look like the Series object is basically interchangeable with a one-dimensional NumPy array.
The essential difference is the presence of the index: while the Numpy Array has an implicitly defined integer index used to access the values, the Pandas Series has an explicitly defined index associated with the values.
This explicit index definition gives the Series object additional capabilities. For example, the index need not be an integer, but can consist of values of any desired type.
For example, if we wish, we can use strings as an index:
data = pd.Series([0.25, 0.5, 0.75, 1.0],
index=['a', 'b', 'c', 'd'])
data
a 0.25
b 0.50
c 0.75
d 1.00
dtype: float64
And the item access works as expected:
data['b']
0.5
We can even use non-contiguous or non-sequential indices:
data = pd.Series([0.25, 0.5, 0.75, 1.0],
index=[2, 5, 3, 7])
data
2 0.25
5 0.50
3 0.75
7 1.00
dtype: float64
data[5]
0.5
Series as specialized dictionary
In this way, you can think of a Pandas Series a bit like a specialization of a Python dictionary.
A dictionary is a structure that maps arbitrary keys to a set of arbitrary values, and a Series is a structure which maps typed keys to a set of typed values.
This typing is important: just as the type-specific compiled code behind a NumPy array makes it more efficient than a Python list for certain operations, the type information of a Pandas Series makes it much more efficient than Python dictionaries for certain operations.
The Series-as-dictionary analogy can be made even more clear by constructing a Series object directly from a Python dictionary:
population_dict = {'California': 38332521,
'Texas': 26448193,
'New York': 19651127,
'Florida': 19552860,
'Illinois': 12882135}
population = pd.Series(population_dict)
population
California 38332521
Florida 19552860
Illinois 12882135
New York 19651127
Texas 26448193
dtype: int64
By default, a Series will be created where the index is drawn from the sorted keys.
From here, typical dictionary-style item access can be performed:
population['California']
38332521
Unlike a dictionary, though, the Series also supports array-style operations such as slicing:
population['California':'Illinois']
California 38332521
Florida 19552860
Illinois 12882135
dtype: int64
We’ll discuss some of the quirks of Pandas indexing and slicing in Data Indexing and Selection.
Constructing Series objects
We’ve already seen a few ways of constructing a Pandas Series from scratch; all of them are some version of the following:
>>> pd.Series(data, index=index)
where index is an optional argument, and data can be one of many entities.
For example, data can be a list or NumPy array, in which case index defaults to an integer sequence:
pd.Series([2, 4, 6])
0 2
1 4
2 6
dtype: int64
data can be a scalar, which is repeated to fill the specified index:
pd.Series(5, index=[100, 200, 300])
100 5
200 5
300 5
dtype: int64
data can be a dictionary, in which index defaults to the sorted dictionary keys:
pd.Series({2:'a', 1:'b', 3:'c'})
1 b
2 a
3 c
dtype: object
In each case, the index can be explicitly set if a different result is preferred:
pd.Series({2:'a', 1:'b', 3:'c'}, index=[3, 2])
3 c
2 a
dtype: object
Notice that in this case, the Series is populated only with the explicitly identified keys.
The Pandas DataFrame Object
The next fundamental structure in Pandas is the DataFrame.
Like the Series object discussed in the previous section, the DataFrame can be thought of either as a generalization of a NumPy array, or as a specialization of a Python dictionary.
We’ll now take a look at each of these perspectives.
DataFrame as a generalized NumPy array
If a Series is an analog of a one-dimensional array with flexible indices, a DataFrame is an analog of a two-dimensional array with both flexible row indices and flexible column names.
Just as you might think of a two-dimensional array as an ordered sequence of aligned one-dimensional columns, you can think of a DataFrame as a sequence of aligned Series objects.
Here, by “aligned” we mean that they share the same index.
To demonstrate this, let’s first construct a new Series listing the area of each of the five states discussed in the previous section:
area_dict = {'California': 423967, 'Texas': 695662, 'New York': 141297,
'Florida': 170312, 'Illinois': 149995}
area = pd.Series(area_dict)
area
California 423967
Florida 170312
Illinois 149995
New York 141297
Texas 695662
dtype: int64
Now that we have this along with the population Series from before, we can use a dictionary to construct a single two-dimensional object containing this information:
states = pd.DataFrame({'population': population,
'area': area})
states
Like the Series object, the DataFrame has an index attribute that gives access to the index labels:
states.index
Index(['California', 'Florida', 'Illinois', 'New York', 'Texas'], dtype='object')
Additionally, the DataFrame has a columns attribute, which is an Index object holding the column labels:
states.columns
Index(['area', 'population'], dtype='object')
Thus the DataFrame can be thought of as a generalization of a two-dimensional NumPy array, where both the rows and columns have a generalized index for accessing the data.
DataFrame as specialized dictionary
Similarly, we can also think of a DataFrame as a specialization of a dictionary.
Where a dictionary maps a key to a value, a DataFrame maps a column name to a Series of column data.
For example, asking for the 'area' attribute returns the Series object containing the areas we saw earlier:
states['area']
California 423967
Florida 170312
Illinois 149995
New York 141297
Texas 695662
Name: area, dtype: int64
Notice the potential point of confusion here: in a two-dimesnional NumPy array, data[0] will return the first row. For a DataFrame, data['col0'] will return the first column.
Because of this, it is probably better to think about DataFrames as generalized dictionaries rather than generalized arrays, though both ways of looking at the situation can be useful.
We’ll explore more flexible means of indexing DataFrames in Data Indexing and Selection.
Constructing DataFrame objects
A Pandas DataFrame can be constructed in a variety of ways.
Here we’ll give several examples.
From a single Series object
A DataFrame is a collection of Series objects, and a single-column DataFrame can be constructed from a single Series:
pd.DataFrame(population, columns=['population'])
From a list of dicts
Any list of dictionaries can be made into a DataFrame.
We’ll use a simple list comprehension to create some data:
data = [{'a': i, 'b': 2 * i}
for i in range(3)]
pd.DataFrame(data)
Even if some keys in the dictionary are missing, Pandas will fill them in with NaN (i.e., “not a number”) values:
pd.DataFrame([{'a': 1, 'b': 2}, {'b': 3, 'c': 4}])
From a dictionary of Series objects
As we saw before, a DataFrame can be constructed from a dictionary of Series objects as well:
pd.DataFrame({'population': population,
'area': area})
From a two-dimensional NumPy array
Given a two-dimensional array of data, we can create a DataFrame with any specified column and index names.
If omitted, an integer index will be used for each:
pd.DataFrame(np.random.rand(3, 2),
columns=['foo', 'bar'],
index=['a', 'b', 'c'])
From a NumPy structured array
We covered structured arrays in Structured Data: NumPy’s Structured Arrays.
A Pandas DataFrame operates much like a structured array, and can be created directly from one:
A = np.zeros(3, dtype=[('A', 'i8'), ('B', 'f8')])
A
array([(0, 0.0), (0, 0.0), (0, 0.0)],
dtype=[('A', '<i8'), ('B', '<f8')])
pd.DataFrame(A)
The Pandas Index Object
We have seen here that both the Series and DataFrame objects contain an explicit index that lets you reference and modify data.
This Index object is an interesting structure in itself, and it can be thought of either as an immutable array or as an ordered set (technically a multi-set, as Index objects may contain repeated values).
Those views have some interesting consequences in the operations available on Index objects.
As a simple example, let’s construct an Index from a list of integers:
ind = pd.Index([2, 3, 5, 7, 11])
ind
Int64Index([2, 3, 5, 7, 11], dtype='int64')
Index as immutable array
The Index in many ways operates like an array.
For example, we can use standard Python indexing notation to retrieve values or slices:
ind[1]
3
ind[::2]
Int64Index([2, 5, 11], dtype='int64')
Index objects also have many of the attributes familiar from NumPy arrays:
print(ind.size, ind.shape, ind.ndim, ind.dtype)
5 (5,) 1 int64
One difference between Index objects and NumPy arrays is that indices are immutable–that is, they cannot be modified via the normal means:
ind[1] = 0
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
<ipython-input-34-40e631c82e8a> in <module>()
----> 1 ind[1] = 0
/Users/jakevdp/anaconda/lib/python3.5/site-packages/pandas/indexes/base.py in __setitem__(self, key, value)
1243
1244 def __setitem__(self, key, value):
-> 1245 raise TypeError("Index does not support mutable operations")
1246
1247 def __getitem__(self, key):
TypeError: Index does not support mutable operations
This immutability makes it safer to share indices between multiple DataFrames and arrays, without the potential for side effects from inadvertent index modification.
Index as ordered set
Pandas objects are designed to facilitate operations such as joins across datasets, which depend on many aspects of set arithmetic.
The Index object follows many of the conventions used by Python’s built-in set data structure, so that unions, intersections, differences, and other combinations can be computed in a familiar way:
indA = pd.Index([1, 3, 5, 7, 9])
indB = pd.Index([2, 3, 5, 7, 11])
indA & indB # intersection
Int64Index([3, 5, 7], dtype='int64')
indA | indB # union
Int64Index([1, 2, 3, 5, 7, 9, 11], dtype='int64')
indA ^ indB # symmetric difference
Int64Index([1, 2, 9, 11], dtype='int64')
These operations may also be accessed via object methods, for example indA.intersection(indB).
< Data Manipulation with Pandas | Contents | Data Indexing and Selection >