Jupyter Snippet NP ch04-code-listing

Chapter 4: Plotting and visualization

Robert Johansson

Source code listings for Numerical Python - Scientific Computing and Data Science Applications with Numpy, SciPy and Matplotlib (ISBN 978-1-484242-45-2).

%matplotlib inline

# %config InlineBackend.figure_format='retina'
# %config InlineBackend.figure_format='svg'

import matplotlib as mpl
import matplotlib.pyplot as plt
mpl.rcParams['mathtext.fontset'] = 'stix'
mpl.rcParams['font.family'] = 'serif'
mpl.rcParams['font.sans-serif'] = 'stix'

import numpy as np

Gettings started

x = np.linspace(-5, 2, 100)

y1 = x**3 + 5*x**2 + 10

y2 = 3*x**2 + 10*x

y3 = 6*x + 10

fig, ax = plt.subplots()

ax.plot(x, y1, color="blue", label="y(x)")
ax.plot(x, y2, color="red", label="y'(x)")
ax.plot(x, y3, color="green", label="y''(x)")

ax.set_xlabel("x")
ax.set_ylabel("y")
ax.legend()

<matplotlib.legend.Legend at 0x11fa75278>

png

fig.savefig("ch4-figure-1.pdf")

mpl.rcParams["font.family"] = "serif"
mpl.rcParams["font.size"] = "12"

fig, ax = plt.subplots()

ax.plot(x, y1, lw=1.5, color="blue", label=r"$y(x)$")
ax.plot(x, y2, lw=1.5, color="red", label=r"$y'(x)$")
ax.plot(x, y3, lw=1.5, color="green", label=r"$y''(x)$")

ax.plot(x, np.zeros_like(x), lw=0.5, color="black")
ax.plot([-3.33, -3.33], [0, (-3.3)**3 + 5*(-3.3)**2 + 10], ls='--', lw=0.5, color="black")
ax.plot([0, 0], [0, 10], lw=0.5, ls='--', color="black")
ax.plot([0], [10], lw=0.5, marker='o', color="blue")
ax.plot([-3.33], [(-3.3)**3 + 5*(-3.3)**2 + 10], lw=0.5, marker='o', color="blue")

ax.set_ylim(-15, 40)
ax.set_yticks([-10, 0, 10, 20, 30])
ax.set_xticks([-4, -2, 0, 2])

ax.set_xlabel("$x$", fontsize=18)
ax.set_ylabel("$y$", fontsize=18)
ax.legend(loc=0, ncol=3, fontsize=14, frameon=False)

fig.tight_layout();

png

fig.savefig("ch4-figure-2.pdf")

mpl.rcParams["font.family"] = "sans-serif"
mpl.rcParams["font.size"] = "10"

Backends

%matplotlib inline
#%config InlineBackend.figure_format='svg'
%config InlineBackend.figure_format='retina'

import matplotlib as mpl
#mpl.use('qt4agg')
import matplotlib.pyplot as plt
import numpy as np

x = np.linspace(-5, 2, 100)
y1 = x**3 + 5*x**2 + 10
y2 = 3*x**2 + 10*x
y3 = 6*x + 10

fig, ax = plt.subplots()

ax.plot(x, y1, color="blue", label="y(x)")
ax.plot(x, y2, color="red", label="y'(x)")
ax.plot(x, y3, color="green", label="y''(x)")

ax.set_xlabel("x")
ax.set_ylabel("y")
ax.legend()

plt.show()

/Users/rob/miniconda3/envs/py3.6/lib/python3.6/site-packages/matplotlib/font_manager.py:1241: UserWarning: findfont: Font family ['sans-serif'] not found. Falling back to DejaVu Sans.
  (prop.get_family(), self.defaultFamily[fontext]))

png

Figure

fig = plt.figure(figsize=(8, 2.5), facecolor="#f1f1f1")

# axes coordinates as fractions of the canvas width and height
left, bottom, width, height = 0.1, 0.1, 0.8, 0.8
ax = fig.add_axes((left, bottom, width, height), facecolor="#e1e1e1")

x = np.linspace(-2, 2, 1000)
y1 = np.cos(40 * x)
y2 = np.exp(-x**2)

ax.plot(x, y1 * y2)
ax.plot(x, y2, 'g')
ax.plot(x, -y2, 'g')
ax.set_xlabel("x")
ax.set_ylabel("y")

fig.savefig("graph.png", dpi=100, facecolor="#f1f1f1")
fig.savefig("graph.pdf", dpi=300, facecolor="#f1f1f1")

png

Plot types

fignum = 0

def hide_labels(fig, ax):
    global fignum
    ax.set_xticks([])
    ax.set_yticks([])
    ax.xaxis.set_ticks_position('none')
    ax.yaxis.set_ticks_position('none')
    ax.axis('tight')
    
    fignum += 1
    fig.savefig("plot-types-%d.pdf" % fignum)

x = np.linspace(-3, 3, 25)
y1 = x**3+ 3 * x**2 + 10
y2 = -1.5 * x**3 + 10*x**2 - 15

fig, ax = plt.subplots(figsize=(4, 3))

ax.plot(x, y1)
ax.plot(x, y2)

hide_labels(fig, ax)

png

fig, ax = plt.subplots(figsize=(4, 3))

ax.step(x, y1)
ax.step(x, y2)

hide_labels(fig, ax)

png

fig, ax = plt.subplots(figsize=(4, 3))
width = 6/50.0
ax.bar(x - width/2, y1, width=width, color="blue")
ax.bar(x + width/2, y2, width=width, color="green")

hide_labels(fig, ax)

png

fig, ax = plt.subplots(figsize=(4, 3))
ax.fill_between(x, y1, y2)

hide_labels(fig, ax)

png

fig, ax = plt.subplots(figsize=(4, 3))
ax.hist(y2, bins=30)
ax.hist(y1, bins=30)

hide_labels(fig, ax)

png

fig, ax = plt.subplots(figsize=(4, 3))

ax.errorbar(x, y2, yerr=y1, fmt='o-')

hide_labels(fig, ax)

png

fig, ax = plt.subplots(figsize=(4, 3))

ax.stem(x, y2, 'b', markerfmt='bs')
ax.stem(x, y1, 'r', markerfmt='ro')

hide_labels(fig, ax)

png

fig, ax = plt.subplots(figsize=(4, 3))

x = np.linspace(0, 5, 50)

ax.scatter(x, -1 + x + 0.25 * x**2 + 2 * np.random.rand(len(x)))
ax.scatter(x, np.sqrt(x) + 2 * np.random.rand(len(x)), color="green")

hide_labels(fig, ax)

png

fig, ax = plt.subplots(figsize=(3, 3))

colors = ['yellowgreen', 'gold', 'lightskyblue', 'lightcoral']

x = y = np.linspace(-2, 2, 10)
X, Y = np.meshgrid(x, y)
U = np.sin(X)
V = np.sin(Y)

ax.quiver(X, Y, U, V)

hide_labels(fig, ax)

png

Text formatting and annotation

fig, ax = plt.subplots(figsize=(8, 4))

x = np.linspace(-20, 20, 100)
y = np.sin(x) / x

ax.plot(x, y)

ax.set_ylabel("y label")
ax.set_xlabel("x label")

for label in ax.get_xticklabels() + ax.get_yticklabels():
    label.set_rotation(45)

png

fig, ax = plt.subplots(figsize=(12, 3))

ax.set_yticks([])
ax.set_xticks([])
ax.set_xlim(-0.5, 3.5)
ax.set_ylim(-0.05, 0.25)
ax.axhline(0)

ax.text(0, 0.1, "Text label", fontsize=14, family="serif")

ax.plot(1, 0, 'o')
ax.annotate("Annotation",
            fontsize=14, family="serif",
            xy=(1, 0), xycoords='data',
            xytext=(+20, +50), textcoords='offset points', 
            arrowprops=dict(arrowstyle="->", connectionstyle="arc3, rad=.5"))

ax.text(2, 0.1, r"Equation: $i\hbar\partial_t \Psi = \hat{H}\Psi$", fontsize=14, family="serif")

fig.savefig("ch4-text-annotation.pdf")

png

Axes

fig, axes = plt.subplots(ncols=2, nrows=3)

png

Line properties

list(range(1, 12, 2))

[1, 3, 5, 7, 9, 11]

import sympy as s
import numpy as np

# a symbolic variable for x, and a numerical array with specific values of x
sym_x = s.Symbol("x")
x = np.linspace(-2 * np.pi, 2 * np.pi, 100)

def sin_expansion(x, n):
    """
    Evaluate the nth order Talyor series expansion
    of sin(x) for the numerical values in the array x.
    """
    return s.lambdify(sym_x, s.sin(sym_x).series(n=n+1).removeO(), 'numpy')(x)

fig, ax = plt.subplots(figsize=(10, 6))

ax.plot(x, np.sin(x), linewidth=4, color="red", label='sin(x)')

colors = ["blue", "black"]
linestyles = [':', '-.', '--']
for idx, n in enumerate(range(1, 12, 2)):
    ax.plot(x, sin_expansion(x, n), color=colors[idx // 3],
            linestyle=linestyles[idx % 3], linewidth=3,
            label="O(%d) approx." % (n+1))
    
ax.set_ylim(-1.1, 1.1)
ax.set_xlim(-1.5*np.pi, 1.5*np.pi)
ax.legend(bbox_to_anchor=(1.02, 1), loc=2, borderaxespad=0.0)
fig.subplots_adjust(right=.75);

png

fig.savefig("sin-expansion.pdf")

fig, axes = plt.subplots(1, 2, figsize=(8, 3.5), sharey=True)

data1 = np.random.randn(200, 2) * np.array([3, 1])
area1 = (np.random.randn(200) + 0.5) * 100

data2 = np.random.randn(200, 2) * np.array([1, 3])
area2 = (np.random.randn(200) + 0.5) * 100

axes[0].scatter(data1[:,0], data1[:,1], color="green", marker="s", s=30, alpha=0.5)
axes[0].scatter(data2[:,0], data2[:,1], color="blue", marker="o", s=30, alpha=0.5)

axes[1].hist([data1[:,1], data2[:,1]], bins=15, color=["green", "blue"], alpha=0.5, orientation='horizontal');

png

Legends

fig, axes = plt.subplots(1, 4, figsize=(16, 4))

x = np.linspace(0, 1, 100)

for n in range(4):
    axes[n].plot(x, x, label="y(x) = x")
    axes[n].plot(x, x + x**2, label="y(x) = x + x**2")
    axes[n].legend(loc=n+1)
    axes[n].set_title("legend(loc=%d)" % (n+1))

fig.tight_layout()
fig.savefig("legend-loc.pdf")

/Users/rob/miniconda3/envs/py3.6/lib/python3.6/site-packages/matplotlib/font_manager.py:1241: UserWarning: findfont: Font family ['sans-serif'] not found. Falling back to DejaVu Sans.
  (prop.get_family(), self.defaultFamily[fontext]))

png

fig, ax = plt.subplots(1, 1, figsize=(8.5, 3))

x = np.linspace(-1, 1, 100)

for n in range(1, 9):
    ax.plot(x, n * x, label="y(x) = %d*x" % n)

ax.legend(ncol=4, loc=3, bbox_to_anchor=(0, 1), fontsize=12)
fig.subplots_adjust(top=.75);
fig.savefig("legend-loc-2.pdf")

png

Axis labels

fig, ax = plt.subplots(figsize=(8, 3), subplot_kw={'facecolor': "#ebf5ff"})

x = np.linspace(0, 50, 500)
ax.plot(x, np.sin(x) * np.exp(-x/10), lw=2)

ax.set_xlabel("x", labelpad=5,
              fontsize=18, fontname='serif', color="blue")
ax.set_ylabel("f(x)", labelpad=15,
              fontsize=18, fontname='serif', color="blue")
ax.set_title("axis labels and title example", loc='left',
             fontsize=16, fontname='serif', color="blue")

fig.tight_layout()
fig.savefig("ch4-axis-labels.pdf")

png

Axis range

x = np.linspace(0, 30, 500)
y = np.sin(x) * np.exp(-x/10)

fig, axes = plt.subplots(1, 3, figsize=(9, 3), subplot_kw={'facecolor': "#ebf5ff"})

axes[0].plot(x, y, lw=2)
axes[0].set_xlim(-5, 35)
axes[0].set_ylim(-1, 1)
axes[0].set_title("set_xlim / set_y_lim")

axes[1].plot(x, y, lw=2)
axes[1].axis('tight')
axes[1].set_title("axis('tight')")

axes[2].plot(x, y, lw=2)
axes[2].axis('equal')
axes[2].set_title("axis('equal')")

fig.savefig("ch4-axis-ranges.pdf")

png

Ticks

x = np.linspace(-2 * np.pi, 2 * np.pi, 500)
y = np.sin(x) * np.exp(-x**2/20)

fig, axes = plt.subplots(1, 4, figsize=(12, 3))

axes[0].plot(x, y, lw=2)
axes[0].set_title("default ticks")

axes[1].plot(x, y, lw=2)
axes[1].set_yticks([-1, 0, 1])
axes[1].set_xticks([-5, 0, 5])
axes[1].set_title("set_xticks")

axes[2].plot(x, y, lw=2)
axes[2].xaxis.set_major_locator(mpl.ticker.MaxNLocator(4))
axes[2].yaxis.set_major_locator(mpl.ticker.FixedLocator([-1, 0, 1]))
axes[2].xaxis.set_minor_locator(mpl.ticker.MaxNLocator(8))
axes[2].yaxis.set_minor_locator(mpl.ticker.MaxNLocator(8))
axes[2].set_title("set_major_locator")

axes[3].plot(x, y, lw=2)
axes[3].set_yticks([-1, 0, 1])
axes[3].set_xticks([-2 * np.pi, -np.pi, 0, np.pi, 2 * np.pi])
axes[3].set_xticklabels(['$-2\pi$', '$-\pi$', 0, r'$\pi$', r'$2\pi$'])
axes[3].xaxis.set_minor_locator(mpl.ticker.FixedLocator([-3 * np.pi / 2, -np.pi/2, 0, np.pi/2, 3 * np.pi/2]))
axes[3].yaxis.set_minor_locator(mpl.ticker.MaxNLocator(4))
axes[3].set_title("set_xticklabels")

fig.tight_layout()
fig.savefig("ch4-axis-ticks.pdf")

png

Grid

fig, axes = plt.subplots(1, 3, figsize=(12, 4))

x_major_ticker = mpl.ticker.MultipleLocator(4)
x_minor_ticker = mpl.ticker.MultipleLocator(1)
y_major_ticker = mpl.ticker.MultipleLocator(0.5)
y_minor_ticker = mpl.ticker.MultipleLocator(0.25)

for ax in axes:
    ax.plot(x, y, lw=2)
    ax.xaxis.set_major_locator(x_major_ticker)
    ax.yaxis.set_major_locator(y_major_ticker)
    ax.xaxis.set_minor_locator(x_minor_ticker)
    ax.yaxis.set_minor_locator(y_minor_ticker)

axes[0].set_title("default grid")
axes[0].grid()

axes[1].set_title("major/minor grid")
axes[1].grid(color="blue", which="both", linestyle=':', linewidth=0.5)

axes[2].set_title("individual x/y major/minor grid")
axes[2].grid(color="grey", which="major", axis='x', linestyle='-', linewidth=0.5)
axes[2].grid(color="grey", which="minor", axis='x', linestyle=':', linewidth=0.25)
axes[2].grid(color="grey", which="major", axis='y', linestyle='-', linewidth=0.5)

fig.tight_layout()
fig.savefig("ch4-axis-grid.pdf")

png

Ticker formatting

fig, axes = plt.subplots(1, 2, figsize=(8, 3))

x = np.linspace(0, 1e5, 100)
y = x ** 2

axes[0].plot(x, y, 'b.')
axes[0].set_title("default labels", loc='right')

axes[1].plot(x, y, 'b')
axes[1].set_title("scientific notation labels", loc='right')

formatter = mpl.ticker.ScalarFormatter(useMathText=True)
formatter.set_scientific(True) 
formatter.set_powerlimits((-1,1)) 
axes[1].xaxis.set_major_formatter(formatter)
axes[1].yaxis.set_major_formatter(formatter)

fig.tight_layout()
fig.savefig("ch4-axis-scientific.pdf")

png

Log plots

fig, axes = plt.subplots(1, 3, figsize=(12, 3))

x = np.linspace(0, 1e3, 100)
y1, y2 = x**3, x**4

axes[0].set_title('loglog')
axes[0].loglog(x, y1, 'b', x, y2, 'r')

axes[1].set_title('semilogy')
axes[1].semilogy(x, y1, 'b', x, y2, 'r')

axes[2].set_title('plot / set_xscale / set_yscale')
axes[2].plot(x, y1, 'b', x, y2, 'r')
axes[2].set_xscale('log')
axes[2].set_yscale('log')

fig.tight_layout()
fig.savefig("ch4-axis-log-plots.pdf")

png

Twin axes

fig, ax1 = plt.subplots(figsize=(8, 4))

r = np.linspace(0, 5, 100)
a = 4 * np.pi * r ** 2  # area
v = (4 * np.pi / 3) * r ** 3  # volume


ax1.set_title("surface area and volume of a sphere", fontsize=16)
ax1.set_xlabel("radius [m]", fontsize=16)

ax1.plot(r, a, lw=2, color="blue")
ax1.set_ylabel(r"surface area ($m^2$)", fontsize=16, color="blue")
for label in ax1.get_yticklabels():
    label.set_color("blue")
    
ax2 = ax1.twinx()
ax2.plot(r, v, lw=2, color="red")
ax2.set_ylabel(r"volume ($m^3$)", fontsize=16, color="red")
for label in ax2.get_yticklabels():
    label.set_color("red")
    
fig.tight_layout()
fig.savefig("ch4-axis-twin-ax.pdf")

png

Spines

x = np.linspace(-10, 10, 500)
y = np.sin(x) / x

fig, ax = plt.subplots(figsize=(8, 4))

ax.plot(x, y, linewidth=2)

# remove top and right spines
ax.spines['right'].set_color('none')
ax.spines['top'].set_color('none')

# remove top and right spine ticks
ax.xaxis.set_ticks_position('bottom')
ax.yaxis.set_ticks_position('left')

# move bottom and left spine to x = 0 and y = 0
ax.spines['bottom'].set_position(('data', 0))
ax.spines['left'].set_position(('data', 0))
    
ax.set_xticks([-10, -5, 5, 10])
ax.set_yticks([0.5, 1])

# give each label a solid background of white, to not overlap with the plot line
for label in ax.get_xticklabels() + ax.get_yticklabels():
    label.set_bbox({'facecolor': 'white',
                    'edgecolor': 'white'})
    
fig.tight_layout()
fig.savefig("ch4-axis-spines.pdf")

png

Advanced grid layout

Inset

fig = plt.figure(figsize=(8, 4))

def f(x):
    return 1/(1 + x**2) + 0.1/(1 + ((3 - x)/0.1)**2)

def plot_and_format_axes(ax, x, f, fontsize):
    ax.plot(x, f(x), linewidth=2)
    ax.xaxis.set_major_locator(mpl.ticker.MaxNLocator(5))
    ax.yaxis.set_major_locator(mpl.ticker.MaxNLocator(4))
    ax.set_xlabel(r"$x$", fontsize=fontsize)
    ax.set_ylabel(r"$f(x)$", fontsize=fontsize)
    
# main graph
ax = fig.add_axes([0.1, 0.15, 0.8, 0.8], facecolor="#f5f5f5")
x = np.linspace(-4, 14, 1000)
plot_and_format_axes(ax, x, f, 18)

# inset
x0, x1 = 2.5, 3.5
ax.axvline(x0, ymax=0.3, color="grey", linestyle=":")
ax.axvline(x1, ymax=0.3, color="grey", linestyle=":")

ax = fig.add_axes([0.5, 0.5, 0.38, 0.42], facecolor='none')
x = np.linspace(x0, x1, 1000)
plot_and_format_axes(ax, x, f, 14)

fig.savefig("ch4-advanced-axes-inset.pdf")

png

Subplots

ncols, nrows = 3, 3

fig, axes = plt.subplots(nrows, ncols)

for m in range(nrows):
    for n in range(ncols):
        axes[m, n].set_xticks([])
        axes[m, n].set_yticks([])
        axes[m, n].text(0.5, 0.5, "axes[%d, %d]" % (m, n),
                        horizontalalignment='center')

png

fig, axes = plt.subplots(2, 2, figsize=(6, 6), sharex=True, sharey=True, squeeze=False)

x1 = np.random.randn(100)
x2 = np.random.randn(100)

axes[0, 0].set_title("Uncorrelated")
axes[0, 0].scatter(x1, x2)

axes[0, 1].set_title("Weakly positively correlated")
axes[0, 1].scatter(x1, x1 + x2)

axes[1, 0].set_title("Weakly negatively correlated")
axes[1, 0].scatter(x1, -x1 + x2)

axes[1, 1].set_title("Strongly correlated")
axes[1, 1].scatter(x1, x1 + 0.15 * x2)

axes[1, 1].set_xlabel("x")
axes[1, 0].set_xlabel("x")
axes[0, 0].set_ylabel("y")
axes[1, 0].set_ylabel("y")

plt.subplots_adjust(left=0.1, right=0.95, bottom=0.1, top=0.95, wspace=0.1, hspace=0.2)

fig.savefig("ch4-advanced-axes-subplots.pdf")

png

fig = plt.figure()

def clear_ticklabels(ax):
    ax.set_yticklabels([])
    ax.set_xticklabels([])

ax0 = plt.subplot2grid((3, 3), (0, 0))
ax1 = plt.subplot2grid((3, 3), (0, 1))
ax2 = plt.subplot2grid((3, 3), (1, 0), colspan=2)
ax3 = plt.subplot2grid((3, 3), (2, 0), colspan=3)
ax4 = plt.subplot2grid((3, 3), (0, 2), rowspan=2)

axes = [ax0, ax1, ax2, ax3, ax4]
[ax.text(0.5, 0.5, "ax%d" % n, horizontalalignment='center') for n, ax in enumerate(axes)]
[clear_ticklabels(ax) for ax in axes]

fig.savefig("ch4-advanced-axes-subplot2grid.pdf")

png

gridspec

from matplotlib.gridspec import GridSpec

fig = plt.figure(figsize=(6, 4))

gs = mpl.gridspec.GridSpec(4, 4)

ax0 = fig.add_subplot(gs[0, 0])
ax1 = fig.add_subplot(gs[1, 1])
ax2 = fig.add_subplot(gs[2, 2])
ax3 = fig.add_subplot(gs[3, 3])

ax4 = fig.add_subplot(gs[0, 1:])
ax5 = fig.add_subplot(gs[1:, 0])

ax6 = fig.add_subplot(gs[1, 2:])
ax7 = fig.add_subplot(gs[2:, 1])

ax8 = fig.add_subplot(gs[2, 3])
ax9 = fig.add_subplot(gs[3, 2])


def clear_ticklabels(ax):
    ax.set_yticklabels([])
    ax.set_xticklabels([])

axes = [ax0, ax1, ax2, ax3, ax4, ax5, ax6, ax7, ax8, ax9]
[ax.text(0.5, 0.5, "ax%d" % n, horizontalalignment='center') for n, ax in enumerate(axes)]
[clear_ticklabels(ax) for ax in axes]

fig.savefig("ch4-advanced-axes-gridspec-1.pdf")

png

fig = plt.figure(figsize=(4, 4))

gs = mpl.gridspec.GridSpec(2, 2,
                           width_ratios=[4, 1],
                           height_ratios=[1, 4],
                           wspace=0.05, hspace=0.05
                           )

ax0 = fig.add_subplot(gs[1, 0])
ax1 = fig.add_subplot(gs[0, 0])
ax2 = fig.add_subplot(gs[1, 1])

def clear_ticklabels(ax):
    ax.set_yticklabels([])
    ax.set_xticklabels([])

axes = [ax0, ax1, ax2]
[ax.text(0.5, 0.5, "ax%d" % n, horizontalalignment='center') for n, ax in enumerate(axes)]
[clear_ticklabels(ax) for ax in axes]

fig.savefig("ch4-advanced-axes-gridspec-2.pdf")

png

Colormap

x = y = np.linspace(-2, 2, 150)
X, Y = np.meshgrid(x, y)

R1 = np.sqrt((X+0.5)**2 + (Y+0.5)**2)
R2 = np.sqrt((X+0.5)**2 + (Y-0.5)**2)
R3 = np.sqrt((X-0.5)**2 + (Y+0.5)**2)
R4 = np.sqrt((X-0.5)**2 + (Y-0.5)**2)

Z = np.sin(10 * R1) / (10 * R1) + np.sin(20 * R4) / (20 * R4)

fig, ax = plt.subplots(figsize=(6, 5))

p = ax.pcolor(X, Y, Z, cmap='seismic', vmin=-abs(Z).max(), vmax=abs(Z).max())
ax.axis('tight')
ax.set_xlabel('x')
ax.set_ylabel('y')
cb = fig.colorbar(p, ax=ax)

png

Z = 1/R1 - 1/R2 - 1/R3 + 1/R4

fig, ax = plt.subplots(figsize=(6, 5))

im = ax.imshow(Z, vmin=-1, vmax=1, cmap=mpl.cm.bwr,
               extent=[x.min(), x.max(), y.min(), y.max()])
im.set_interpolation('bilinear')

ax.axis('tight')
ax.set_xlabel('x')
ax.set_ylabel('y')
cb = fig.colorbar(p, ax=ax)

png

x = y = np.linspace(-2, 2, 150)
X, Y = np.meshgrid(x, y)

R1 = np.sqrt((X+0.5)**2 + (Y+0.5)**2)
R2 = np.sqrt((X+0.5)**2 + (Y-0.5)**2)
R3 = np.sqrt((X-0.5)**2 + (Y+0.5)**2)
R4 = np.sqrt((X-0.5)**2 + (Y-0.5)**2)

fig, axes = plt.subplots(1, 4, figsize=(14, 3))

Z = np.sin(10 * R1) / (10 * R1) + np.sin(20 * R4) / (20 * R4)


p = axes[0].pcolor(X, Y, Z, cmap='seismic', vmin=-abs(Z).max(), vmax=abs(Z).max())
axes[0].axis('tight')
axes[0].set_xlabel('x')
axes[0].set_ylabel('y')
axes[0].set_title("pcolor")
axes[0].xaxis.set_major_locator(mpl.ticker.MaxNLocator(4))
axes[0].yaxis.set_major_locator(mpl.ticker.MaxNLocator(4))


cb = fig.colorbar(p, ax=axes[0])
cb.set_label("z")
cb.set_ticks([-1, -.5, 0, .5, 1])


Z = 1/R1 - 1/R2 - 1/R3 + 1/R4

im = axes[1].imshow(Z, vmin=-1, vmax=1, cmap=mpl.cm.bwr,
               extent=[x.min(), x.max(), y.min(), y.max()])
im.set_interpolation('bilinear')

axes[1].axis('tight')
axes[1].set_xlabel('x')
axes[1].set_ylabel('y')
axes[1].set_title("imshow")
cb = fig.colorbar(im, ax=axes[1])

axes[1].xaxis.set_major_locator(mpl.ticker.MaxNLocator(4))
axes[1].yaxis.set_major_locator(mpl.ticker.MaxNLocator(4))
#cb.ax.set_axes_locator(mpl.ticker.MaxNLocator(4))
cb.set_label("z")
cb.set_ticks([-1, -.5, 0, .5, 1])

x = y = np.linspace(0, 1, 75)
X, Y = np.meshgrid(x, y)
Z = - 2 * np.cos(2 * np.pi * X) * np.cos(2 * np.pi * Y) - 0.7 * np.cos(np.pi - 4*np.pi*X)

c = axes[2].contour(X, Y, Z, 15, cmap=mpl.cm.RdBu, vmin=-1, vmax=1)

axes[2].axis('tight')
axes[2].set_xlabel('x')
axes[2].set_ylabel('y')
axes[2].set_title("contour")

axes[2].xaxis.set_major_locator(mpl.ticker.MaxNLocator(4))
axes[2].yaxis.set_major_locator(mpl.ticker.MaxNLocator(4))


c = axes[3].contourf(X, Y, Z, 15, cmap=mpl.cm.RdBu, vmin=-1, vmax=1)

axes[3].axis('tight')
axes[3].set_xlabel('x')
axes[3].set_ylabel('y')
axes[3].set_title("contourf")

axes[3].xaxis.set_major_locator(mpl.ticker.MaxNLocator(4))
axes[3].yaxis.set_major_locator(mpl.ticker.MaxNLocator(4))

fig.tight_layout()
fig.savefig('ch4-colormaps.pdf')

png

fig, ax = plt.subplots(figsize=(6, 5))

x = y = np.linspace(0, 1, 75)
X, Y = np.meshgrid(x, y)

Z = - 2 * np.cos(2 * np.pi * X) * np.cos(2 * np.pi * Y) - 0.7 * np.cos(np.pi - 4*np.pi*X)

c = ax.contour(X, Y, Z, 15, cmap=mpl.cm.RdBu, vmin=-1, vmax=1)

ax.axis('tight')
ax.set_xlabel('x')
ax.set_ylabel('y')

Text(0, 0.5, 'y')

png

x = y = np.linspace(-10, 10, 150)
X, Y = np.meshgrid(x, y)
Z = np.cos(X) * np.cos(Y) * np.exp(-(X/5)**2-(Y/5)**2)

fig, ax = plt.subplots(figsize=(6, 5))

p = ax.pcolor(X, Y, Z, vmin=-abs(Z).max(), vmax=abs(Z).max(), cmap=mpl.cm.bwr)

ax.axis('tight')
ax.set_xlabel(r"$x$", fontsize=18)
ax.set_ylabel(r"$y$", fontsize=18)
ax.xaxis.set_major_locator(mpl.ticker.MaxNLocator(4))
ax.yaxis.set_major_locator(mpl.ticker.MaxNLocator(4))

cb = fig.colorbar(p, ax=ax)
cb.set_label(r"$z$", fontsize=18)
cb.set_ticks([-1, -.5, 0, .5, 1])

fig.savefig("ch4-colormap-pcolor.pdf")

png

3D plots

from mpl_toolkits.mplot3d.axes3d import Axes3D

x = y = np.linspace(-3, 3, 74)
X, Y = np.meshgrid(x, y)

R = np.sqrt(X**2 + Y**2)
Z = np.sin(4 * R) / R

fig, axes = plt.subplots(1, 3, figsize=(14, 4), subplot_kw={'projection': '3d'})

def title_and_labels(ax, title):
    ax.set_title(title)
    ax.set_xlabel("$x$", fontsize=16)
    ax.set_ylabel("$y$", fontsize=16)
    ax.set_zlabel("$z$", fontsize=16)

norm = mpl.colors.Normalize(-abs(Z).max(), abs(Z).max())

p = axes[0].plot_surface(X, Y, Z, rstride=1, cstride=1, linewidth=0, antialiased=False, norm=norm, cmap=mpl.cm.Blues)
cb = fig.colorbar(p, ax=axes[0], shrink=0.6)
title_and_labels(axes[0], "plot_surface")

p = axes[1].plot_wireframe(X, Y, Z, rstride=2, cstride=2, color="darkgrey")
title_and_labels(axes[1], "plot_wireframe")

cset = axes[2].contour(X, Y, Z, zdir='z', offset=0, norm=norm, cmap=mpl.cm.Blues)
cset = axes[2].contour(X, Y, Z, zdir='y', offset=3, norm=norm, cmap=mpl.cm.Blues)
title_and_labels(axes[2], "contour")

fig.tight_layout()
fig.savefig("ch4-3d-plots.png", dpi=200)

png

fig, axes = plt.subplots(1, 3, figsize=(14, 4), subplot_kw={'projection': '3d'})

def title_and_labels(ax, title):
    ax.set_title(title)
    ax.set_xlabel("$x$", fontsize=16)
    ax.set_ylabel("$y$", fontsize=16)
    ax.set_zlabel("$z$", fontsize=16)

norm = mpl.colors.Normalize(-abs(Z).max(), abs(Z).max())

r = np.linspace(0, 10, 100)
p = axes[0].plot(np.cos(r), np.sin(r), 6 - r)
#cb = fig.colorbar(p, ax=axes[0], shrink=0.6)
title_and_labels(axes[0], "plot")

p = axes[1].scatter(np.cos(r), np.sin(r), 6 - r)
title_and_labels(axes[1], "scatter")

r = np.linspace(0, 6, 20)
p = axes[2].bar3d(np.cos(r), np.sin(r), 0* np.ones_like(r), 0.05* np.ones_like(r), 0.05 * np.ones_like(r), 6 - r)
title_and_labels(axes[2], "contour")
axes[2].text(0, 0, 0, "label")
fig.tight_layout()
#fig.savefig("ch4-3d-plots.png", dpi=200)

png

Versions

%reload_ext version_information

%version_information numpy, matplotlib